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www.rbvi.ucsf.edu /chimera /. UCSF Chimera (or simply Chimera) is an extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. [1] High-quality images and movies can ...
Chimera is a software library created as a research project at UCSB for the C programming language that implements a structured, peer-to-peer routing platform to allow the easy development of peer-to-peer applications. The project's focus is on providing a fast, lightweight implementation of a system like other prefix-routing protocols such as ...
Comparison of software for molecular mechanics modeling. This is a list of computer programs that are predominantly used for molecular mechanics calculations. GPU – GPU accelerated. I – Has interface. Imp – Implicit water. MC – Monte Carlo. MD – Molecular dynamics. Min – Optimization. QM – Quantum mechanics.
For other uses, see Chimera. In molecular biology, and more importantly high-throughput DNA sequencing, a chimera is a single DNA sequence originating when multiple transcripts or DNA sequences get joined. Chimeras can be considered artifacts and be filtered out from the data during processing [ 1 ] to prevent spurious inferences of biological ...
Constituent amino-acids can be analyzed to predict secondary, tertiary and quaternary protein structure. This list of protein structure prediction software summarizes notable used software tools in protein structure prediction, including homology modeling, protein threading, ab initio methods, secondary structure prediction, and transmembrane helix and signal peptide prediction.
Chimera Linux is a Linux distribution striving for the minimum complexity of system configuration while retaining and expanding on the flexibility common to general purpose Linux based systems. The distribution has no upstream and defines itself as "independent" from this perspective. A strict default security model, employing the in ...
Chimera, Chimaera, or Chimaira (Greek for "she-goat") originally referred to: Chimera (mythology), a fire-breathing monster of ancient Lycia said to combine parts from multiple animals. Mount Chimaera, a fire-spewing region of Lycia or Cilicia typically considered the inspiration for the myth.
A combination of tools is employed: PALMapper (reads alignment), mTiM and mGene (inference of new transcripts). Salmon is a software tool for computing transcript abundance from RNA-seq data using either an alignment-free (based directly on the raw reads) or an alignment-based (based on pre-computed alignments) approach. It uses an online ...